CellProfiler


CPCluster Help Questions about cluster computing with CellProfiler 2.0 and CPCluster 2.0.
CellProfiler Bugs Report or discuss all CellProfiler 2.0 bugs here.
New CellProfiler Modules Have ideas or already written new modules for CellProfiler 2.0?
CellProfiler Help All questions related to CellProfiler 2.0 may be directed here.

Before Posting: Tips [CellProfiler] (2)
Welcome to the CellProfiler forum! [CellProfiler] (2)
About the CellProfiler category [CellProfiler] (1)
What is minimum cross entropy thresholding good for [CellProfiler] (1)
CellProfiler 3.0.0 Linux defaults to headless [CellProfiler] (3)
Problem with clumped cells and low signal/background ratio [CellProfiler Help] (2)
C++ assertion Error CP 3.0 [CellProfiler] (3)
Crop multiple images from a single image based on objects [CellProfiler Help] (2)
Pipeline for bright field images [CellProfiler Help] (3)
Save Object in CP3 [CellProfiler Help] (2)
CP3.0: error in ExportToDatabase during startup: too many columns on analysis_Per_Object [CellProfiler] (12)
3D Analysis Not Working [CellProfiler] (2)
CP 2 and 3 simultaneously on Ubuntu [CellProfiler Help] (10)
Nuclolus detection problems [CellProfiler Help] (6)
Nucleolus Pipeline Problems [CellProfiler Help] (1)
Enabling "Process as 3D?" in NamesAndTypes input module in CP 3.0 complains of "invalid TIFF file" with DeltaVision .dv images [CellProfiler Bugs] (5)
Quality control for high-Throughput Imaging experiemnts [CellProfiler Help] (2)
MeasureGranularity module - interpreting output features [CellProfiler] (1)
CellProfiler 3 Windows 10 large dataset [CellProfiler] (5)
Example pipelines only compatible with 3.0.0 or later? [CellProfiler] (3)
CellProfiler 3.0.0 startup issue on Windows 10 [CellProfiler] (4)
Compatibility issues upgrading 2.2.0 project to 3.0 [CellProfiler Help] (4)
Running pipeline without CP GUI? [CellProfiler] (2)
CellProfiler crashes using EditObjectsManually [CellProfiler Bugs] (4)
RNAscope in Spinal Cord Neurons -> Quantitation of overlap between different In Situ Probes [CellProfiler Help] (15)
3D Error With .lif and ome.tif files [CellProfiler] (3)
Executing a CellProfiler pipeline from Terminal (Mac OS X) [CellProfiler Help] (13)
Memory Error Message [CellProfiler Help] (8)
Unable to differentiate between different myofiber types in the image [CellProfiler] (6)
.nd2 images are not correctly recognized [CellProfiler] (6)