CPCluster Help Questions about cluster computing with CellProfiler 2.0 and CPCluster 2.0.
CellProfiler Help All questions related to CellProfiler 2.0 may be directed here.
New CellProfiler Modules Have ideas or already written new modules for CellProfiler 2.0?
CellProfiler Bugs Report or discuss all CellProfiler 2.0 bugs here.

Before Posting: Tips [CellProfiler] (2)
Welcome to the CellProfiler forum! [CellProfiler] (2)
About the CellProfiler category [CellProfiler] (1)
Differentiating neurons from dendrites [CellProfiler Help] (1)
Area ratio for brightfield image [CellProfiler Help] (7)
How to obtain data per well rather than per field-of-view? [CellProfiler Help] (4)
Error message while running analysis in Cell Profiler [CellProfiler Help] (2)
Separating Channels from ND2 Files [CellProfiler Help] (2)
Something wrong in "Area ratio for brightfield image" [CellProfiler] (1)
Bundling javabridge, bioformats, etc — how does CellProfiler do it? [CellProfiler] (3)
FilterObjects: Is there a way to filter mean intensities by percentage of the maximum intensity? [CellProfiler Help] (1)
CellProfiler 3.0.0 startup issue on Windows 10 [CellProfiler] (7)
CellProfiler installation error Linux Mint 18.3 'Sylvia' [CellProfiler Help] (3)
CP3.3.0 error with 'overlayoutlines' and 'displaydataonimage' [CellProfiler] (7)
Error loading batch file when running CP2.2.0 on cluster [CPCluster Help] (1)
Install window #cellprofiler: failure [CellProfiler] (2)
Missing functionality in Threshold module [CellProfiler Help] (3)
Colocalization of three antibody staining [CellProfiler Help] (1)
Installation/ Start up issue [CellProfiler Help] (3)
Build dependencies from source [CellProfiler Help] (1)
Connection to OMERO reset? [CellProfiler Bugs] (3)
C++ assertion Error CP 3.0 [CellProfiler] (4)
All objects yellow - are there to many? [CellProfiler Help] (6)
View total run time after pipeline completion [CellProfiler Help] (2)
How to export data from a single module [CellProfiler] (2)
Cellprofiler 3.0.0 not working - Java problem? [CellProfiler Bugs] (13)
Analysis of multiple different image sets by fluorescence intensity - how to ensure consistency across different image sets [CellProfiler Help] (1)
CP 3.0.0rc1 not starting up in Mac ( 2 ) [CellProfiler Bugs] (27)
FillObjects plugin [CellProfiler Help] (4)
Improving CellProfiler Speed [CellProfiler Help] (4)