I have a similar question as Fabba123 and was wondering if there was a work around.
Is there a way to scatterplot a subset of data, allowing you to "show cells in gate" for that subset? The "show cells in ..." feature seems to ignore filters. It would be nice to be able evaluate my expt controls individually as a plot and with the "show cells in ..." feature.
More simply, is it possible to retrieve images of all objects (as in the "show cells in gate" feature) that meet a set of criteria that is entered manually? For example Metadata_Well = H12 AND nuclei_Intensity_MedianIntensity_mCherry >0.008?