Bug in MeaureObjectAreaShape module


#1

Hi,
I have a simple pipeline which works nicely with the MeasureObjectIntensity only. As soon as I add afterwards the MeasureObjectAreaShape module to the pipeline, cellprofiler returns a lot of error messages through the console like (java… source unknown etc). The measurement should be performed on the same objects as with MeasureObjectIntensity module. I noticed that the MeasureObjectAreaShape module does not offer any option to define a source image, as opposed to the MeaureObjectIntensity module. Might this be the reason? If you like, I can send you the pipeline.

Thanks,
Stefan


#2

Sorry, I realised that it is probably a memory issue if the pipeline gets too long and the preferences are set to “show all windows”. This results in a crash of CellProfiler independently of the used modules.

Stefan


#3

Hi,

Did closing all the display windows correct your problem? Usually java errors are due to memory issues as you mentioned.

Regards,
Mike


#4

Yes, it did.
Thanks,
Stefan