I am wondering if it would be possible to add the phenotype enrichment score calculation from CPA to a CellProfiler pipeline? It appears to work well for assessing stem cell colony quality but the measurement data table from CP needs to be loaded into CPA to get the per well enrichment score. Thought that I would ask if it is possible to add this functionality into a custom module. Thanks in advance for any feedback on this idea!
One thing you can try is to export the enrichment scores into a CSV that you can then load into CellProfiler using the Metadata module. Then you can choose which images to process based on the enrichment score, a threshold of sorts, by getting clever with the regular expressions.