CellProfiler Analyst 2.2.1 has been released!



CellProfiler Analyst 2.2.1

It includes a lot of new features such as:

  • A new image gallery model which allows you to display your fields-of-view and fetch all cells from an image just by right clicking
  • Faster classifiers from scikit-learn
  • The possibility to save the object and image thumbnails
  • Possibility to train multiple classifiers at the same time
  • Multiclass support
  • Importing and exporting classifiers
  • Inspecting predicted probability scores for each cell
  • Upgrade to wx-python 3
  • Evaluation plots (confusion matrix, classification report)
  • Image classification
  • CSV support for loading training files

A new manual (http://cellprofiler.org/CPA/) and a lot of bug fixes!

We also release a nightly build option.
If you want us to fix a bug, this is probably what you want.

Thank you @daviddao!



It’s true! After a very long dormant period, CellProfiler Analyst has come back to life thanks to @daviddao and @J_Hung, and including @allen_goodman for fixing some really annoying build issues! Training cell classifiers is super fast and works well for multiple classes. We are so grateful for all your hard work making this tool available again!