Many thanks for your video again. I’m in the middle of trying to import by following ur video and you may have seen I recently have posted some queries about single mask export error. Taking one step back, I am wanting to clarify this thinking I have with you, to ensure my understanding of ilastik and CP is correct.
Ilastik utilities pixel classification to identify cells and thus is a very powerful tool in a coculture condition where cells have marked difference. So after creating masks for the different populations, you can either export individual, or all to be incooperated into CP. The mask itself is like a “paint over” the desired population of cells and in conjunction of the original image (i.e z projection in grale scale), these two together can then be imported into CP, grouped together and thus identify the masked cells? All the subsequent measurement parameters can then be actioned whether it is size or intensity calculation.
Is this the right interpretation of the overall workflow?