For two reasons I’m trying to create the pipeline with the CreateBatchFiles module on my desktop linux computer and run batchrun.sh on a cluster that has a different file system from my desktop computer (of course, after copying the files created by clicking “Analyze images” to the cluster).
My home directory on the desktop is /home/bwittner and on the cluster it’s /shr/home/bwittner.
So, in the part of the CreateBatchFiles module where it asks for correspondence between the local machine and the cluster, I entered “/home” for the local machine part and “/shr/home” for the cluster machine part.
Nevertheless, when I ran on the cluster, I got the following error message:
Warning: Could not find appropriate function on path loading function handle /home/bwittner/cellp/CellProfiler_mcr/nfs/sabatini6_ata/2006_09_14_CPRelease4303/LINUX_CellProfiler/CellProfiler.m>LoadPipeline_Callback
Notice that it’s looking in /home/bwittner instead of /shr/home/bwittner, despite the fact that I tried to tell it how to translate from local to cluster.
Any help would be greatly appreciated.