Error message while running analysis in Cell Profiler



Hello everybody!
I am new to CellProfiler and I have just started using it to analyse my live imaging experiments.
I created a pipeline to recognize for every image the number of dots in the green channel, but when I run the analysis on my image set, which is composed of nearly one thousand pics - divided into the three channels, I receive the following message:

I don´t understand what is the issue. Here is the pipeline:
MS2_Speckles_v3.cppipe (18.7 KB)



Hi Lucerzia,

I searched the forum for the error message and it seems a few other people have had this problem and managed to fix it by going to the Window menu item and selecting “Hide All Windows On Run”

Hopefully, that will help.