Error while loading shared libraries: libmwmclmcrrt.so.7.4


#1

./CellProfiler: error while loading shared libraries: libmwmclmcrrt.so.7.4: cannot open shared object file: No such file or directory

I compiled CellProfiler with the CompileWizard, and I set my LD_LIBRARY_PATH to where libmwmclmcrrt.so.7.4 is located.

It still gives me that same error.

Any ideas?

Thanks in Advance,
Ken


#2

not sure if this helps

mcc -m CellProfiler -a ‘CPsubfunctions/CPsplash.jpg’ -v -z ‘/opt/home/matlab/CellProfiler/MCR/v74/runtime/glnxa64’
Warning: Duplicate directory name: /opt/home/matlab/R2006a/toolbox/local.
Compiler version: 4.4 (R2006a)
Depfun main loop, iteration 1
Processing /opt/home/matlab/R2006a/toolbox/matlab/mcc.enc
1 item(s) added.
Processing /opt/home/matlab/R2006a/toolbox/images/mcc.enc
1 item(s) added.
Processing /opt/home/matlab/R2006a/toolbox/shared/imageslib/mcc.enc
Processing dependencies…
0 item(s) added.
Depfun main loop, iteration 2
Processing dependencies…
0 item(s) added.
Processing include files…
2 item(s) added.
Processing exclude list…
0 item(s) excluded by M-file compilabilty rules.
Processing directories installed with MCR…
1110 item(s) excluded because they ship with the MCR.
The file mccExcludedFiles.log contains a list of functions excluded from the CTF archive.
0 item(s) added.
Generating MATLAB path for the compiled application…
Created 42 path items.
Depfun main loop converged in 2 iterations, total number of files = 435
Begin validation of MEX files: Thu Jan 17 15:50:25 2008
Validating ‘/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/Modules/IdentifySecPropagateSubfunction.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/compiler/deploy/readline.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/applylutc.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/bwlabel1.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/bwlabel2.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/bwlabelnmex.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/bwpackc.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/bwunpackc.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/cq.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/ddist.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/images/private/ddist.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/images/private/ddist.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/ditherc.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/images/private/ditherc.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/images/private/ditherc.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/eucdist2.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/images/private/eucdist2.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/images/private/eucdist2.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/grayto16.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/images/private/grayto16.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/images/private/grayto16.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/grayto8.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/images/private/grayto8.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/images/private/grayto8.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/imfilter_mex.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/imhistc.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/images/private/imhistc.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/images/private/imhistc.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/imlincombc.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/immultmex.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/imreconstructmex.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/ind2rgb8c.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/int16touint16.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/intlutc.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/morphmex.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/nnsearch.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/images/private/nnsearch.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/images/private/nnsearch.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/ordf.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/parityscan.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/regionboundariesmex.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/regionpropsmex.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/resampsep.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/uint16toint16.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/images/private/watershed_vs.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/iptutils/iptcheckinput.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/iptutils/iptcheckinput.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/iptutils/iptcheckinput.mexa64’
is valid. It contains 'mexFunction.‘
Validating ‘/opt/home/matlab/R2006a/toolbox/images/iptutils/private/iptregistry.mexa64’.
Found M-file ‘/opt/home/matlab/R2006a/toolbox/images/iptutils/private/iptregistry.m’.
MEX file
’/opt/home/matlab/R2006a/toolbox/images/iptutils/private/iptregistry.mexa64’
is valid. It contains 'mexFunction.'
Validating ‘/opt/home/matlab/R2006a/toolbox/images/medformats/private/dicom_decode_rle_segment.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/medformats/private/dicomparse.mexa64’.
No conflicting M-file found.
Validating ‘/opt/home/matlab/R2006a/toolbox/images/medformats/private/tobits.mexa64’.
No conflicting M-file found.
End validation of MEX files: Thu Jan 17 15:50:25 2008
Deleting 36 temporary MEX authorization files.
Removing: ‘/tmp/file49tpy5.auth’.
Removing: ‘/tmp/filegFg8tU.auth’.
Removing: ‘/tmp/fileTxBUpJ.auth’.
Removing: ‘/tmp/fileMwyHly.auth’.
Removing: ‘/tmp/file7Nhvhn.auth’.
Removing: ‘/tmp/filed2ujdc.auth’.
Removing: ‘/tmp/fileJjs880.auth’.
Removing: ‘/tmp/file78RX4P.auth’.
Removing: ‘/tmp/fileCbXN0E.auth’.
Removing: ‘/tmp/fileyuOEWt.auth’.
Removing: ‘/tmp/fileC78vSi.auth’.
Removing: ‘/tmp/filekK9nO7.auth’.
Removing: ‘/tmp/fileoLYgKW.auth’.
Removing: ‘/tmp/fileeihaGL.auth’.
Removing: ‘/tmp/filepVj4BA.auth’.
Removing: ‘/tmp/filebuQYxp.auth’.
Removing: ‘/tmp/filebX6Tte.auth’.
Removing: ‘/tmp/filetsSPp3.auth’.
Removing: ‘/tmp/file8yjMlS.auth’.
Removing: ‘/tmp/fileT6wJhH.auth’.
Removing: ‘/tmp/file8OdHdw.auth’.
Removing: ‘/tmp/file2AzF9k.auth’.
Removing: ‘/tmp/filerpyF59.auth’.
Removing: ‘/tmp/fileQmkG1Y.auth’.
Removing: ‘/tmp/fileOBLHXN.auth’.
Removing: ‘/tmp/file3oGJTC.auth’.
Removing: ‘/tmp/filegAnMPr.auth’.
Removing: ‘/tmp/fileEYzPLg.auth’.
Removing: ‘/tmp/fileiiwTH5.auth’.
Removing: ‘/tmp/filekx8XDU.auth’.
Removing: ‘/tmp/fileh0d3zJ.auth’.
Removing: ‘/tmp/file1aLawy.auth’.
Removing: ‘/tmp/fileLs2isn.auth’.
Removing: ‘/tmp/file3Vtsoc.auth’.
Removing: ‘/tmp/fileXEsDk1.auth’.
Removing: ‘/tmp/fileZRePgQ.auth’.
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”
(Referenced from: “Compiler Command Line”).
Parsing file “/opt/home/matlab/R2006a/toolbox/compiler/deploy/matlabrc.m”
(Referenced from: “Compiler Command Line”).
Parsing file “/opt/home/matlab/R2006a/toolbox/compiler/dirname.m”
(Referenced from: “Compiler Command Line”).
Parsing file “/opt/home/matlab/R2006a/toolbox/compiler/deploy/deployprint.m”
(Referenced from: “Compiler Command Line”).
Parsing file “/opt/home/matlab/R2006a/toolbox/compiler/deploy/printdlg.m”
(Referenced from: “Compiler Command Line”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPerrordlg.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPfigure.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPhelpdlg.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPimagesc.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPimread.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPinputdlg.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPlogo.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPmsgbox.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPquestdlg.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPretrievemediafilenames.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPselectmodules.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPtextdisplaybox.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPtextpipe.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPuigetfile.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPwaitbar.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CPsubfunctions/CPwarndlg.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/ImageTools/OpenNewImageFile.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/addpath.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graph2d/axis.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/close.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graph3d/colormap.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/timefun/date.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/timefun/datestr.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/fgetl.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/fileparts.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/findall.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/fullfile.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/gcbo.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/gcf.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/genpath.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/getappdata.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/datatypes/getfield.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graph3d/gray.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/gui_mainfcn.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/guidata.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/guihandles.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/imagesci/imread.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/images/imuitools/imshow.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/images/iptutils/iptsetpref.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/isappdata.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/datatypes/iscell.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/strfun/iscellstr.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/datatypes/iscom.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/isdeployed.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/isdir.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/datatypes/isfield.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/ispc.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/lang/lasterror.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/movegui.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/timefun/now.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/strfun/num2str.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/open.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/openfig.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/pwd.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/datatypes/rmfield.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/compiler/deploy/savepath.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/strfun/str2double.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/strfun/strmatch.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/strfun/strtok.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/strfun/strtrim.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/textwrap.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/timerfind.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graph2d/title.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/uipanel.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/uiwait.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/urlread.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/urlwrite.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/warndlg.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/zip.m”
(Referenced from: “/opt/home/matlab/CellProfiler/CellProfiler_MATLAB_1.0.4942/CellProfiler.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/compiler/deploy/hgrc.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/matlabrc.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/usejava.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/matlabrc.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/uitools/msgbox.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/deployprint.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/datatypes/num2cell.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/deployprint.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/orient.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/deployprint.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/graphics/print.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/deployprint.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/strfun/str2num.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/deployprint.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/iofun/tempname.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/deployprint.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/path.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/printdlg.m”).
Parsing file “/opt/home/matlab/R2006a/toolbox/matlab/general/rmpath.m”
(Referenced from: “/opt/home/matlab/R2006a/toolbox/compiler/deploy/printdlg.m”).
Generating file “CellProfiler_main.c”.
Generating file “CellProfiler_mcc_component_data.c”.
Executing command: mbuild -I"/opt/home/matlab/CellProfiler/MCR/v74/runtime/glnxa64/extern/include" -O -v -output “CellProfiler” “CellProfiler_main.c” “CellProfiler_mcc_component_data.c” -link exe


-> mbuildopts.sh sourced from directory (DIR = $TMW_ROOT/bin)
FILE = /opt/home/matlab/R2006a/bin/mbuildopts.sh

-> TMW_ROOT = /opt/home/matlab/R2006a
-> CC = gcc
-> CC flags:
CFLAGS = -I/opt/home/matlab/R2006a/extern/include -DUNIX -DX11 -ansi -D_GNU_SOURCE -pthread -fexceptions
CDEBUGFLAGS = -g
COPTIMFLAGS = -O -DNDEBUG
CLIBS = -Wl,-rpath-link,/opt/home/matlab/R2006a/bin/glnxa64 -L/opt/home/matlab/R2006a/bin/glnxa64 -lmwmclmcrrt -lm -lstdc++
arguments = -I/opt/home/matlab/CellProfiler/MCR/v74/runtime/glnxa64/extern/include
-> LD = gcc
-> Link flags:
LDFLAGS = -pthread
LDDEBUGFLAGS = -g
LDOPTIMFLAGS = -O
arguments =

-> gcc -c -I/opt/home/matlab/R2006a/extern/include -DUNIX -DX11 -ansi -D_GNU_SOURCE -pthread -fexceptions -I/opt/home/matlab/CellProfiler/MCR/v74/runtime/glnxa64/extern/include -O -DNDEBUG CellProfiler_main.c

-> gcc -c -I/opt/home/matlab/R2006a/extern/include -DUNIX -DX11 -ansi -D_GNU_SOURCE -pthread -fexceptions -I/opt/home/matlab/CellProfiler/MCR/v74/runtime/glnxa64/extern/include -O -DNDEBUG CellProfiler_mcc_component_data.c

-> gcc -O -pthread -o CellProfiler CellProfiler_main.o CellProfiler_mcc_component_data.o -Wl,-rpath-link,/opt/home/matlab/R2006a/bin/glnxa64 -L/opt/home/matlab/R2006a/bin/glnxa64 -lmwmclmcrrt -lm -lstdc++


#3

I figured out what went wrong.
During setting my path, I typed

LD_LIBRARY_PATH = [my MCR directory]

I fixed it by typing

export LD_LIBRARY_PATH = [my MCR directory]


#4

Sorry for not responding earlier - we just weren’t sure what was wrong. Glad you got it fixed, as well as posting it for others’ knowledge.
Cheers,
Dave