I have successfully installed the latest Github version of CellProfiler on a cluster and can run the graphical interface through VNC to setup the batch pipeline.
However, I get a JVM error when I try to run CellProfiler in batch mode:
JVM will be started with AWT in headless mode Creating JVM object Error occurred during initialization of VM Could not allocate metaspace: 1073741824 bytes
According to Google, this might have something to do with
ulimit, but I would not know how to address this on the cluster.
Can you give me any recommendations how to fix this?
Many thanks in advance.