This problem seems similar to the first one I wrote about.
On my local machine /home corresponds to /blast on the cluster and I believe I properly so indicated in the CreateBatchFiles module.
We are now using LoadSingleImage in our pipeline. I got the error message below, which seems to indicate that LoadSingleImage does not make use of the information in CreateBatchFiles regarding translating local names to cluster names.
Batch Error: LoadSingleImage Error using ==> LoadSingleImage Image processing was canceled in the LoadSingleImage module because the directory “/home/bwittner/celld/output/sub.45” does not exist. Be sure that no spaces or unusual characters exist in your typed entry and that the pathname of the directory begins with / (for Mac/Unix) or \ (for PC).