I am using this pipeline to analyze my pictures:
The pipeline goes fine but there is a small problem in the Excel file created. Every data seems fine in the first row, but there is a missing data for every other row (raw (Image, IntensityToShift)). So, all data (except for the first row) after the missing one are under the bad “title”. It’s not a big problem but I just wanted to inform. I’m using CellProfiler 1.0.5122 with Windows XP.