I am trying to process a batch of around 45000 images on 3 Windows PCs (15000 per PC). I set up a pipline that works well when tested on a small subset of images in the appropriate file structure. However, when I ran the full sets they all crashed with the same error message, at around the same time, with about the same number of images processed (~1100). The error message was:
CellProfiler>AnalyzeImagesButton_Callback at 7988
CellProfiler>gui_mainfcn at 9740
CellProfiler at 61
This was running the latest version of CellProfiler on machines with 2GB RAM. All machines were using 1.5GB of memory and 1.5GB virtual memory. The error reported in matlab crash dump file was a segementation violation.
Any idea what is going on? Is it running out of memory?