Hello, first post here. Let me start off by saying that I love this software and have found it extremely useful. I have successfully implemented a number of image analysis pipelines, and was interested in using the Paramorama plugin to optimize object identification steps in my analyses.
I have successfully enabled the “Initialize Sampling” window, and can begin an analysis run. For example, if I want to determine the minimum/maximize size parameters to recognize nuclei in a DAPI image, I can check the box and adjust the minimum and maximum size ranges, output file name, etc. However, when I run the analysis, I get a number of errors, and the resulting .tsv file is blank.
I suspect something may be wrong with my CellProfiler installation (Windows, 2.2 stable build), but am unsure how to proceed. A sample of the traceback errors:
File “cellprofiler\pipeline.pyc”, line 2135, in prepare_run
File “cellprofiler\modules\exporttospreadsheet.pyc”, line 470, in prepare_run
File “cellprofiler\modules\exporttospreadsheet.pyc”, line 715, in check_overwrite
IndexError: index 0 is out of bounds for axis 0 with size 0
Any help would be greatly appreciated.