Pipeline Error cellprofiler


#1

Hi,
I am analysing around 1800 images and getting some pipeline error for different modules.
Can anyone please let me know how to fix it.


#2

Hi,

Are the “eyeballs” next to some or all of your modules open, causing them to display a window? If so, can you try closing them and seeing if that fixes the issue (you can use Window->Hide All Windows On Run) to shut them all? As a bonus, you’ll find your processing speeds should increase as well.

If none of them are, can you post the pipeline and some sample images? Thanks.