Pipeline Error cellprofiler


I am analysing around 1800 images and getting some pipeline error for different modules.
Can anyone please let me know how to fix it.



Are the “eyeballs” next to some or all of your modules open, causing them to display a window? If so, can you try closing them and seeing if that fixes the issue (you can use Window->Hide All Windows On Run) to shut them all? As a bonus, you’ll find your processing speeds should increase as well.

If none of them are, can you post the pipeline and some sample images? Thanks.