Hello, me again.
I have found a workaround for the “TIFF issue”: basically I exported the raw images of the 96 wells plate into TIFFS and used these in CP. The analysis looks good AND now I can open corresponding images in CPA either by selecting images from a defined well or using the classifier function. So far, so good…
There is still something I’m struggling with: in the Export to Database module I have checked the option to “save thumbnails directly in the database” so that I can do without all the Overlay Outlines and Save Images modules that you can see in the CP project I sent in my first post (at least I think this is the overall sense of writing thumbnails in the Database directly…). Now, in CPA, if I click on a well in the PlateViewer module I can see the “show thumbnail montage” option, however if I click on it I have…yet another error message that goes like this:
An error occurred in the program:
IndexError: list index out of range
Traceback (most recent call last):
File “platemappanel.pyc”, line 465, in
File “platemappanel.pyc”, line 496, in show_thumbnail_montage
File “imagetools.pyc”, line 121, in MergeToBitmap
File “imagetools.pyc”, line 165, in MergeChannels
Am I doing something wrong? is there another way to access the thumbnails I saved in the Database?