Running a serial of pipelines automatically on a PC


#1

Hi, Everyone,

I have several sets of pictures to be analyzed and I set up a pipeline for each set of pictures. I am wondering if I could program the CP so that all the saved pipelines could be loaded and run automatically.

Thank you for your help.

Paradise


#2

Hi,

The latest versions of CellProfiler (5811 and above) have the ability to run multiple pipelines serially. Go to File > Run Multiple Pipelines and it will ask you to provide a directory where the pipelines are located. The function assumes that the pipelines are either located all in a root directory or in subdirectories under the root, so you’ll have to organize your pipelines/folders accordingly. After that it will show a list of all the pipelines it found and give you the choice of running any or all of them.

Hope this helps!
-Mark