I’m trying to run specific pipeline( made at CP 2.2.0) without Cell profiler GUI.
By using matlab or python.
Before running it needs to input image files, and set output image & csv file path.
I’m looking up at (https://github.com/CellProfiler/CellProfiler/wiki#Running_CellProfiler_from_the_command_line)
but yet unsure whether it is possible. Please let me know if this is possible.
Thank you for reading