hi, i’ve recently installed CellProfiler on Ubuntu 14.04 by following source install instruction so I assume i’m running the most recent version. then I’ve tried hard to count positively stained cells from IHC images and finally realized that IHC profiler plugin in ImageJ works just best. the problem is that I still need to stick to CellProfiler, 'cause there are other functionalities that ImageJ does not support.
so I think the best option is to use runImageJ module to utilize the plugin, but I cannot find the module in my CellProfiler. what should I do?